Decreased expression of the GABAA receptor in fragile X syndrome
Introduction
Fragile X syndrome is the most common form of inherited mental retardation, with a prevalence of 1 to 4000 in males and 1 to 6000 in females [reviewed by Bardoni et al. (2006) Gantois et al. (2004) O'Donnell and Warren (2002)]. Patients are characterized by mild to severe impairment of the higher cognitive functions and display various physical abnormalities, e.g., macroorchidism (enlarged testes) and craniofacial anomalies such as a typical long face, prominent jaws and elongated ears (Hagerman, 2002). Associated behavioral problems include hyperactivity and autistic-like features. In addition, 20% of the patients suffer from epileptic seizures. The syndrome is usually caused by a dynamic mutation of a CGG repeat in the 5′ untranslated region of the fragile X mental retardation gene 1 (FMR1) (Verkerk et al., 1991). Elongation of this repeat above a threshold of 200 copies induces hypermethylation of the CpG islands in the promoter region and concomitant transcriptional silencing, preventing synthesis of the FMR1 gene product FMRP (Pieretti et al., 1991).#
FMRP is an RNA-binding protein with particular high expression in neurons and gonads. The protein aggregates with multiple mRNAs and proteins to form a messenger ribonucleic protein complex (mRNP), which is transported out of the nucleus through its nuclear export signal (Jin and Warren, 2003). Once in the cytoplasm, the complex can associate with members of the RNA-induced silencing complex (RISC) before associating with ribosomes. The FMRP–mRNP complex can be transported through dendrites to actively translating polyribosomes near the synapses, where it may play a role in local protein synthesis as a translational inhibitor (Laggerbauer et al. 2001; Li et al. 2001; Zalfa et al. 2003). Major mechanisms by which FMRP is thought to exert its repressing activity are through the RNA interference pathway or by acting as a nucleic acid chaperone (Bardoni et al. 2006; Gabus et al. 2004; Jin et al. 2004).#
Interruption of the murine Fmr1 gene generated a mouse model for fragile X syndrome (Bakker et al., 1994). Fragile X knockout mice show mild cognitive deficits, hyperactivity, macroorchidism and increased sensitivity to epileptic seizures, features comparable with symptoms observed in fragile X patients (Bakker and Oostra 2003; Kooy 2003). Pathological studies revealed the presence of long tortuous, immature dendritic spines being denser along dendrites, as observed in patients (Braun and Segal 2000; Comery et al. 1997; Irwin et al. 2002; Nimchinski et al. 2001). FMRP may therefore affect synaptic development and maturation in the central nervous system. The invertebrate homologue of Fmr1 in fruit flies, namely ‘Drosophila melanogaster fragile X mental retardation gene 1’ (dFmr1), exhibits high neuronal expression levels. The associated gene product dFmrp displays considerable amino acid sequence identity/similarity with the vertebrate FMRP, especially within the functional domains. It possesses similar RNA-binding capacity as well as the ability to interact with human FMR1 (Wan et al., 2000). dFmr1 deficient fly models have been generated (Dockendorff et al. 2002; Michel et al. 2004; Morales et al. 2002; Zhang and Broadie 2005). dFmrp is required for normal neurite expansion, guidance and branching. Loss of dFmrp causes behavioral defects like abnormal eclosion and circadian rhythm behavior and anomalies in the morphology of several central nervous system neuronal populations.#
Despite increased insights in the function of FMRP in the cell, the central question why absence of FMRP causes mental retardation and additional symptoms in fragile X patients remains to be elucidated. In a previous genome wide expression profiling study, our group found differential expression in neurons of specific brain parts from fragile X knockout mice limited to 3 cDNAs only, including the δ subunit of the GABAA receptor (Gantois et al., 2006). To further investigate a possible role of decreased expression of this ion channel in fragile X syndrome, we determined the relative expression of all GABAA receptor subunits in the mouse and fly model using real-time PCR. We found evidence that under expression of multiple subunits of the GABAA receptor is an evolutionary conserved hallmark of fragile X syndrome. As GABAA receptors are the main inhibitory receptors in brain, involved in processes also disturbed in fragile X patients such as anxiety, depression, epilepsy, insomnia and learning and memory (Mihalek et al., 1999), we believe that new powerful therapeutic opportunities for treatment of behavioral problems associated with fragile X syndrome might arise from these observations.#
Results
Mus musculus
Cortical and cerebellar tissue of adult fragile X male mice and their control littermates was isolated and reverse transcribed as indicated in the experimental procedure. These regions were selected because in the initial genome wide study under expression of the δ subunit of the GABAA receptor was found in cortex but not in cerebellum. GABAA receptors display an extensive structural heterogeneity based on the differential assembly of a family of at least 18 different subunits (α1–6, β1–3, γ1–3, δ, ε, θ, π and ρ1–2) into distinct pentameric receptor complexes. Assays-on-demands® (ABI) were selected for every single known subunit of the GABAA receptor and for 3 reference genes (Gapdh, Hmbs and Hprt). Vandesompele et al. (2002) recommend the minimal use of 3 internal control genes to calculate the RT-PCR normalization factor to control for variables such as the amount of starting material, enzymatic efficiencies, and differences between tissues or cells in overall transcriptional activity. After performing the real-time PCR experiments, we calculated the coefficient of variance (CV) and the M-value for every single reference gene as described (Vandesompele et al., 2002) to analyze the stability of the internal control genes (Table 1). The measured values were amply within the norm.#
For every subunit, we calculated the relative expression (RE), i.e. the ratio of the geometric means of the normalized expression values of the controls vs. the knockouts, e.g., RE (δ)= 58% means that the expression of the GABAA receptor δ subunit in cortex of knockout mice is only 58% of the expression seen in cortex of control littermates, which means a reduction of 42% (Table 2). This value corresponds to our initial observations where we found a significant reduction of 45% for the expression of the δ subunit in cortex but not in cerebellum (Gantois et al., 2006). In addition, 7 other subunits, namely α1, α3 and α4, β1 and β2 and γ1 and γ2, were significantly under expressed in the knockout mice. Differential expression was observed in cortex, but not in cerebellum (Table 2).#
Drosophila melanogaster
Additionally, we measured the relative expression of the GABA receptor subunits in the D. melanogaster fragile X model (Morales et al., 2002). Ionotropic GABA receptors are found throughout the nervous system of various insect specious. To date, 3 receptor subunit classes have been cloned in D. melanogaster with a high sequence identity to vertebrate ionotropic GABA receptors, namely Rdl (resistant to dieldrin), Grd (GABA and glycine-like receptor of Drosophila) and Lcch3 (ligand-gated chloride channel homologue 3) (Hosie et al., 1997). Using real-time PCR, we compared the expression of Rdl, Grd and Lcch3 in wild-type strains with dFmr1−/− mutant fruit flies (Table 2). Because reference genes for use in real-time PCR experiments are not well documented in Drosophila, we tested the stability of 4 different reference genes: Dsh, Rpl32, TfIIb and Nadh. Based on the coefficients of variance and M-values (geNorm) (Vandesompele et al., 2002), we selected the two most stable genes Dsh and Rpl32 to normalize the real-time results (Table 1). Our results revealed significant reduction of 40%–50% in expression of all 3 subunits responsible for the assembly of the GABA receptor in dFmr1−/− mutants compared with the wild-type strain (Table 2).#
To find out whether the expression of the GABA receptor subunits is directly regulated by FMRP, we additionally determined the expression levels in rescue strains containing 1 or 2 dFmr1 copies, randomly inserted in the genome of the dFmr1−/− null mutant. We observed a significant rise in the normalized RNA amount for Grd (1-way ANOVA, P=0.016) and Rdl (P=0.009) in function of the number of dFmr1 copies, which indicates a direct correlation between the expression of dFmrp and the amount of GABA receptor subunit mRNA in these two subunits (Fig. 1).#
Discussion
Ionotropic receptors for the neurotransmitter γ-aminobutyric acid (GABA) are widespread mediators of rapid neurotransmission in the nervous systems of both vertebrates and invertebrates. In mammals, 30–50% of all synapses in the central nervous system are GABAergic (Paredes and Agmo, 1992). GABAA receptors mediate fast synaptic inhibition in brain and spinal cord because their associated channels are permeable to Cl− ions; the flow of the negatively charged ions inhibits postsynaptic cells since the reversal potential for Cl− is more negative than the threshold for neuronal firing. Like other types of ionotropic receptors, mammalian GABAA receptors are pentamers assembled from a combination of individual subunits from 8 families with multiple isoforms: α1–6, β1–4, γ1–4, δ, ε, θ, π and ρ1–2. The expression pattern of individual subunits generates a high diversity of GABAA receptor subtypes in a spatio-temporal dependent manner with a major functional and pharmacological diversity between GABAA receptor subtypes mutually (Barnard et al. 1998; Kneussel 2002; Korpi et al. 2002). GABAA receptors are modulated by many drugs, including ethanol, benzodiazepines, various anesthetics and neuroactive steroids.#
D. melanogaster has a much simpler GABA receptor system, consisting of three genes only, namely Rdl (resistance to dieldrin), Grd (GABA and glycine-like receptor of Drosophila) and Lcch3 (ligand-gated chloride channel homologue 3) (Hosie et al., 1997). As in their vertebrate counterparts, the binding of GABA to the receptor causes a fast, temporary opening of anion-selective ion channels with an inhibitory response as a consequence. The subunits encoded by Rdl display 30%–38% homology with vertebrate GABA receptor subunits, about the same percentage of identity as seen between the different classes of vertebrate subunits (Ffrench-Constant et al., 1991). Grd displays 33–44% identity with vertebrate GABAA and glycine receptor α subunits (Harvey et al., 1994), and Lcch3 shows 47% identity with the vertebrate GABAA receptor β subunit isoforms (Henderson et al., 1993) (Fig. 2). Lcch3 can function as a subunit with Rdl in Cl− channels (Zhang et al., 1995) and with Grd in cation channels (Gisselmann et al., 2004). It is the subunit composition which determines the picrotoxin and bicuculline sensitivity of the receptor.#
Using real-time PCR, we found significant under expression of 8 out of 18 known subunits of the GABAA receptor, namely α1, α3 and α4, β1 and β2 and γ1 and γ2 and δ, in cortex of fragile X mice, a validated model for fragile X syndrome, compared to their control littermates. The under expression of the δ subunit is the most significant, thereby offering a possible explanation why only this subunit was picked up in our initial genome wide expression profiling study. Our results suggest under expression of both the most frequent subtype of the GABAA receptor, α1β2γ2, that makes up 60% of the GABAA receptors in brain and which is sensitive to benzodiazepines (e.g., Diazepam), and the δ-containing subtype of the GABAA receptor, α4βnδ, which is sensitive to neuroactive steroids such as alphaxalone, a synthetic analogue of allopregnanolone (a natural occurring metabolite of progesterone).#
In addition, we found a nearly 50% reduction in expression of all 3 GABA receptor subunits, Grd, Rdl and Lcch3, in the fragile X fruit fly compared with wild-type strains, suggesting that under expression of specific subunits of the GABAA receptor is an evolutionary conserved hallmark of fragile X syndrome. Moreover, mRNA expression of subunits Rdl and Grd was shown to be dependent on the number of dFmr1 copies, indicating a direct correlation between the amount of dFmrp and the expression of the GABA receptor.#
We can only speculate the cause of the under expression of the GABAA receptor subunits in the fragile X animal models. Miyashiro et al. (2003) demonstrated a direct binding between FMRP and the mRNA of the δ subunit of the GABAA receptor using the Antibody Positioned RNA Amplification (APRA) technique, suggesting a direct effect of FMRP on transport and/or localization of GABAA receptor subunits. As FMRP plays an important role in transport and translation of mRNA, it could be speculated that in the absence of FMRP RNAs, normally bound to FMRP, are misregulated and/or degraded.#
Although we demonstrate under expression of various subunits at the mRNA level, results by others indicate that the protein level is also affected. Firstly, El Idrissi et al. (2005) have detected a reduced expression of the β subunit of the GABAA receptor on protein level in cortex, hippocampus, diencephalon and brainstem of fragile X mice using Western blot analysis. Nevertheless, additional protein expression studies are necessary to validate our results on protein level. Secondly, Gruss and Braun (2004) found that the ratio between inhibitory (taurine and GABA) and excitatory (aspartate and glutamate) amino acids in fragile X mouse brainstem, hippocampus and caudal cortex was decreased. Thirdly, electrophysiological recordings suggest a decreased GABAergic system efficiency in fragile X knock out mice that in turn may interfere with cholinergic mechanisms (D'Antuono et al., 2003). Moreover, preliminary results of our group predict mRNA under expression of glutamic acid decarboxylase (GAD), the limiting enzyme responsible for GABA synthesis in the presynaptic terminal of inhibiting synapses, in brain of fragile X mutant fruit flies (D'Hulst, Hassan and Kooy, unpublished results).#
In conclusion, we present evidence that decreased expression of the GABAA receptor is an evolutionary conserved hallmark of fragile X syndrome. As GABAA receptors are involved in anxiety, depression, epilepsy, insomnia and learning and memory (Mihalek et al., 1999), processes also disturbed in patients (Table 3), we might have identified a new target for rational drug therapy of the behavioral abnormalities and epilepsy associated with fragile X syndrome.#
Experimental procedure
Animal and tissue preparation
M. musculus
Male C57BL/6J wild-type mice, purchased from Charles River (Wilmington, MA, USA), were crossed with females heterozygous for the Fmr1 mutation and backcrossed for at least 20 generations in the same genetic background. After DNA isolation from mouse tails, genotypes were determined by polymerase chain reaction (PCR) as described (Bakker et al., 1994). Male Fmr1 knockout mice and male control littermates with an average age of 8–12weeks were used. Mixed genotype groups of approximately 5 littermates were housed in standard mouse cages under conventional laboratory conditions (food and water ad libitum, constant room temperature and humidity, 12:12h light–dark cycle). After cervical dislocation, the brain was immediately removed; frontal cortex and cerebellum were dissected and frozen in liquid nitrogen. All experiments were carried out in compliance to the European Communities Council Directive (86/609/EEC) and approved by the Animal Ethics Committee of the University of Antwerp.#
D. melanogaster
White Canton-S flies were used as wild-type controls (lab stock). Fragile X deficient flies were selected from a stock of the genotype w;P{dfmr1}/+;dfmr13/TM6C,Tb,Sb (a kind gift from T. Jongens) allowing for the selection of dfmr13 mutants (0r) or dfmr13 mutants possessing 1 (1r) or 2 (2r) copies of a genomic rescue insertion (Dockendorff et al., 2002). Table 4 details the crossing scheme used to obtain the appropriate genotype. All mating schemes were performed on standard fly food at controlled ambient temperatures.#
RNA
M. musculus
After homogenizing the different brain parts of 11 knockouts and 11 control littermates (with beads of 0.5mm in the Mini Beadbeater, Biospec products, Bartleville, OK, USA), total cellular RNA was isolated using Trizol (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. After RNase-free DNAse treatment (Ambion, Austin, TX, USA), RNA quality was tested using spectrophotometry with an optical density ratio 260/280 between 1.8 and 2 as requirement.#
D. melanogaster
Total cellular RNA (per strain (wt, 0r, 1r and 2r) 10 pools of 20 fly heads) was isolated using Trizol (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. After RNase-free DNAse treatment of the RNA samples, RNA quality was checked with the automated gel electrophoresis Experion system from Biorad (Hercules, CA, USA); 28S/18S ratios between 1 and 2 were used as requirement.#
Real-time PCR (qPCR)
M. musculus
mRNA expression was examined by an optimized two-step real-time quantitative PCR assay (RT-PCR). In the reverse transcription step (RT), cDNA was reverse transcribed from total RNA samples using random hexamer primers from the Superscript™ III First-strand synthesis system for RT-PCR (Invitrogen, Carlsbad, CA, USA). Genomic contamination of the generated cDNA was checked with 2 primers located in exons overspanning an intron. First strand cDNA was diluted in TE−4 buffer until a final maximum concentration of 120ng/μl. In the PCR step, PCR products were synthesized from cDNA samples using the qPCR MasterMix plus w/o UNG (Eurogentec, Seraing, Belgium). As detection method, we used Assays-on-demands (ABI, Foster City, CA, USA) containing a forward and a reverse primer, and a TaqMan MGB probe (6-FAM dye-labeled) built on Applied Biosystems 5′ nuclease chemistry and developed specifically for detection of the gene of interest (Table 5). In the majority of the cases, the probes crossed exon–exon junctions excluding the possibility of amplification of genomic DNA. The PCR mixtures were run on an ABI 7000 sequence detection system. The cycling conditions were as follows: 2min 50 °C, 10min 95 °C and 40 cycles at 95 °C for 15s and 60 °C for 1min. Per brain region, we compared 11 control samples with 11 knockouts. We maximized the number of samples and minimized the number of genes per run. Every 96 well plate contained a no template control and all the samples were spotted in duplex. The results of the Sequence Detection Software (Applied Biosystems) were exported as tab delimited files and imported into the relative quantification software qBase (Hellemans et al., in preparation; http://medgen.ugent.be/qbase/) for further analysis. This program performs a raw data quality control and calculates the normalized quantities of the genes of interest and reports the reference gene quality values (mean coefficient of variation of the normalized reference genes quantities and the geNorm stability value M, Table 1). Here the transcription levels were normalized by the geometric mean of 3 stably expressed reference genes (Gapdh, Hmbs and Hprt). A Mann–Whitney U non-parametrical test was used to check the statistical significance (p<0.05) of the obtained results (SPSS Inc., Version 12.0, Chicago, IL, USA).#
D. melanogaster
Setup and analysis of the real-time experiments were analogous to those described for the mouse model. The transcription levels were normalized by the geometric mean of 2 stably expressed reference genes (Rpl32 and Dsh). Per strain (wt, 0r, 1r en 2r), we screened 10 independent cDNA samples. A Mann–Whitney U non-parametrical test was used to check the statistical significance (p<0.05) of the difference between wt and 0r. Additionally, we used a 1-way ANOVA to compare group differences between 0r, 1r and 2r (SPSS 12.0).#
Acknowledgments
We thank Jo Vandesompele for his advice in analyzing the real-time PCR results and Philip Pattyn for his help with the RNA quality analysis. We thank Pierre Codde and Ivan Aerts for the animal care. This study was supported through grants of the National Fragile X Foundation (NFXF), the Institute for the Promotion of Innovation through Science and Technology in Flanders (IWT Vlaanderen), the Belgian National Fund for Scientific Research-Flanders (FWO) and the Fondation Jerôme Lejeune.#
Figures and Tables
Table 1
| Brain part | ||||||
| Mus musculus | ||||||
| Reference gene | Cortex (C vs. KO) | Cerebellum (C vs. KO) | ||||
| CV (%)a | M (geNorm)b | CV (%) | M (geNorm) | |||
| Gapdh | 25.13 | 1.3093 | 21.01 | 0.5924 | ||
| Hmbs | 25.73 | 1.3120 | 19.00 | 0.5008 | ||
| Hprt | 26.70 | 0.6288 | 29.92 | 0.6828 | ||
| Mean | 25.85 | 1.0834 | 22.85 | 0.5920 | ||
| Drosophila melanogaster | ||||||
| Reference gene | 0r vs. wt | 0r vs. 1r | 0r vs. 2r | |||
| CV (%) | M (geNorm) | CV (%) | M (geNorm) | CV (%) | M (geNorm) | |
| Dsh | 30.05 | 0.7554 | 20.96 | 0.5971 | 23.93 | 0.6834 |
| Rpl32 | 23.12 | 0.7554 | 20.72 | 0.5971 | 23.83 | 0.6834 |
| Mean | 26.58 | 0.7554 | 20.84 | 0.5971 | 23.88 | 0.6834 |
| 0r, 1r and 2r: Fly strains containing respectively none (0r), 1 (1r) and 2 (2r) dFmr1 copies. |
Table 2
| Mus musculus | ||||
| Subunit GABAAR | Cortex | Cerebellum | ||
| RE (KO) | Significance | RE (KO) | Significance | |
| α1 | 65% | p<0.05 | 96% | NS |
| α2 | 90% | NS | 97% | NS |
| α3 | 58% | p<0.01 | 97% | NS |
| α4a | 77% | p<0.05 | LE | |
| α5 | 83% | NS | 104% | NS |
| α6b | LE | 67% | NS | |
| β1 | 67% | p<0.05 | 98% | NS |
| β2 | 55% | p<0.01 | 86% | NS |
| β3 | 83% | NS | 104% | NS |
| δ | 58% | p≪0.01 | 83% | NS |
| γ1 | 64% | p<0.01 | 92% | NS |
| γ2 | 61% | p<0.01 | 97% | NS |
| γ3 | 87% | NS | 113% | NS |
| π | LE | LE | ||
| ε | LE | LE | ||
| ρ1 | LE | LE | ||
| ρ2 | LE | LE | ||
| θ | LE | LE | ||
| Drosophila melanogaster | ||||
| Subunit GABAR | Wt vs. 0r | |||
| RE (dFmr1−/− mutant) | Significance | |||
| Grd | 58% | p<0.05 | ||
| Rdl | 60% | p<0.01 | ||
| Lcch3 | 51% | p<0.01 | ||
| NS: not significant, LE: expression too low to detect reliable differences between samples.The given percentages indicate the expression of the specific GABAA receptor subunits left in brain of respectively the mouse and fly model for fragile X syndrome. The subunits in bold are significantly under expressed. |
Table 3
| Symptoms | % of affected males | References |
| Neurological abnormalities | ||
| Epileptic seizures | 20–25% | Musumeci et al., 2000 |
| Deviant EEG | ||
| –Medium to high-voltage unilateral or bilateral spikes in the temporal lobe | 58% | Musumeci et al., 1999 |
| –Rolandic spikes | 17% | Musumeci et al., 1999 |
| Sleeping problems | NA | Gould et al., 2000 |
| Behavioral problems | ||
| Autistic features | 60–92.5% | Hagerman, 2002 |
| Hyperactivity | 67% | Hagerman, 2002 |
| Anxiety | 73.5% | Hagerman, 2002 |
| NA: not available. |
Table 4
| wt/rescue;dFmr1−/TM6 X wt/rescue;dFmr1−/TM6 | |||
| Frequency | Genotype | Code | Phenotype |
| 1/3 | rescue/wt; dFmr1−/TM6 | Short bristles | |
| 1/6 | rescue/rescue; dFmr1−/TM6 | Short bristles | |
| 1/6 | rescue/wt; dFmr1−/dFmr1− | 1r | Long, normal bristles, orange eyes |
| 1/12 | rescue/rescue; dFmr1−/dFmr1− | 2r | Long, normal bristles, red eyes |
| 1/12 | wt/wt; dFmr1−/dFmr1− | 0r | Long, normal bristles, white eyes |
| 1/6 | wt/wt; dFmr1−/TM6 | Short bristles | |
| The rescue allele and the dFmr1−/− allele both are located on the 2nd chromosome. TM6 is a balancer chromosome that makes it possible to determine the genotype by looking at the phenotype. In this crossing the wild-type strain is not available; TM6/TM6 is lethal. |
Table 5
| Gene | Assay ID |
| M. musculus | |
| Reference genes | |
| Hprt | Mm00446968_m1 |
| Gapdh | Mm99999915_g1 |
| Hmbs | Mm006660261_g1 |
| Subunits of GABAA R | |
| δ | Mm00433476_m1 |
| α1 | Mm00439040_m1 |
| α2 | Mm00433435_m1 |
| α3 | Mm00433440_m1 |
| α4 | Mm00802631_m1 |
| α5 | Mm00621092_m1 |
| α6 | Mm00433456_m1 |
| β1 | Mm00433461_m1 |
| β2 | Mm00433467_m1 |
| β3 | Mm00433473_m1 |
| ε | Mm00489932_m1 |
| γ1 | Mm00439047_m1 |
| γ2 | Mm00433489_m1 |
| γ3 | Mm00433494_m1 |
| θ | Mm00445057_m1 |
| ρ1 | Mm00433499_m1 |
| ρ2 | Mm00433507_m1 |
| π | Mm00524604_m1 |
| D. melanogaster | |
| Reference genes | |
| Dsh | Dm02371846_s1 |
| Rpl32 | Dm02151827_g1 |
| Subunits of GABAR | |
| Rdl | Dm01822422_m1 |
| Grd | Dm01823018_m1 |
| Lcch3 | Dm01799500_g1 |
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